Determine Shigella serotype from assemblies or Illumina paired-end reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs
Assembly or paired-end Illumina reads
*.{fasta,fasta.gz,fastq.gz}
versions
File containing software versions
versions.yml
tsv
A TSV formatted file with ShigEiFinder results
*.tsv
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
