Determine Shigella serotype from assemblies or Illumina paired-end reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs:file
Assembly or paired-end Illumina reads
*.{fasta,fasta.gz,fastq.gz}
tsv
*.tsv:file
A TSV formatted file with ShigEiFinder results
*.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
