Description
simpleaf is a program to simplify and customize the running and configuration of single-cell processing with alevin-fry.
Input
Name (Type)
Description
Pattern
Chemistry used for library preparation. It can be a string describing
the specific chemistry or the geometry of the barcode, UMI, and
mappable read. For example, “10xv2” and “10xv3” will apply the
appropriate settings for 10x Chromium v2 and v3 protocols,
respectively. Alternatively, you can provide a general geometry string
if your chemistry is not pre-registered. For example, instead of
“10xv2”, you could use “1{b[16]u[10]x:}2{r:}”, or instead of “10xv3”,
you could use “1{b[16]u[12]x:}2{r:}“.