Description

Fast, efficient, lossless compression of FASTQ files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

Either a single-end FASTQ file or paired-end files.

*.{fq.gz,fastq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

sfq (file)

Either one or two sequence files in slimfastq compressed format.

*.{sfq}

Tools

slimfastq
BSD-3-clause

slimfastq efficiently compresses/decompresses FASTQ files