Description

Fast, efficient, lossless compression of FASTQ files.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fastq

:file

Either a single-end FASTQ file or paired-end files.

*.{fq.gz,fastq.gz}

Output

name:type
description
pattern

sfq

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.sfq

:file

Either one or two sequence files in slimfastq compressed format.

*.{sfq}

versions_slimfastq

${task.process}

:string

The name of the process

slimfastq

:string

The name of the tool

2.04

:string

The version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

slimfastq

:string

The name of the tool

2.04

:string

The version of the tool

Tools

slimfastq
BSD-3-clause

slimfastq efficiently compresses/decompresses FASTQ files