Description

Fast, efficient, lossless compression of FASTQ files.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fastq:file

Either a single-end FASTQ file or paired-end files.

*.{fq.gz,fastq.gz}

Output

name:type
description
pattern

sfq

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.sfq:file

Either one or two sequence files in slimfastq compressed format.

*.{sfq}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

slimfastq
BSD-3-clause

slimfastq efficiently compresses/decompresses FASTQ files