Linearize and simplify variation graph in GFA format using blocked partial order alignment
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gfa
:file
Variation graph in GFA 1.0 format
*.{gfa}
*smoothxg.gfa
Linearized and simplified graph in GFA 1.0 format
*.smoothxg.{gfa}
maf
*.maf
write the multiple sequence alignments (MSAs) in MAF format in this file (optional)
*.{maf}
versions_smoothxg
${task.process}
:string
The name of the process
smoothxg
The name of the tool
smoothxg --version 2>&1 | sed 's/^v//; s/-.*//'
:eval
The expression to obtain the version of the tool
versions
smoothxg linearizes and simplifies variation graphs using blocked partial order alignment.
