structural-variant calling with sniffles
meta
Groovy Map containing sample information e.g. [ id:‘test’ ]
input
A single .bam/.cram file - OR - one or more .snf files - OR - a single .tsv file containing a list of .snf files and optional sample ids as input
*.{bam,cram,snf,tsv}
index
Index of BAM/CAM file
*.{bai,crai}
meta2
Groovy Map containing reference information e.g. [ id:‘fasta’ ]
fasta
Reference database in FASTA format
meta3
Groovy Map containing tandem repeat information e.g. [ id:‘hg38’ ]
tandem_file
Tandem repeat file
*.bed
vcf
Compressed VCF file
*.vcf.gz
tbi
Compressed VCF file index
*.tbi
snf
SNF file
*.snf
versions
File containing software versions
versions.yml
a fast structural variant caller for long-read sequencing
