Description

Pairwise SNP distance matrix from a FASTA sequence alignment

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

alignment (file)

The input FASTA sequence alignment file

*.{fasta,fasta.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tsv (file)

The output TSV file containing SNP distance matrix

*.tsv

versions (file)

File containing software versions

versions.yml

Tools

snpdists
GPL v3

Convert a FASTA alignment to SNP distance matrix