Genetic variant annotation and functional effect prediction toolbox
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
snpeff_db{:bash}
:string
SnpEff database name
Output
name:type
description
pattern
cache{:bash}
meta{:bash}
:file
snpEff cache
snpeff_cache{:bash}
:file
snpEff cache
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
snpeff
MIT
SnpEff is a variant annotation and effect prediction tool.
It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).
