Genetic variant annotation and functional effect prediction toolbox
Input
name:type
description
pattern
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
genome:file
Reference genome in FASTA format
*.{fasta,fna,fa}
cache_version:string
Version of the snpEff cache to download
Output
name:type
description
pattern
cache
meta:file
snpEff cache
snpeff_cache:file
snpEff cache
versions
versions.yml:file
File containing software versions
versions.yml
Tools
snpeff
MIT
SnpEff is a variant annotation and effect prediction tool.
It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).
