Genetic variant annotation and functional effect prediction toolbox
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
snpeff_db{:bash}
:string
SnpEff database name
Output
name:type
description
pattern
cache{:bash}
meta{:bash}
:file
snpEff cache
snpeff_cache{:bash}
:file
snpEff cache
versions_snpeff{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
snpeff{:bash}
:string
The tool name
snpEff -version 2>&1 | cut -f 2 -d ' '{:bash}
:string
The command used to generate the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
snpeff{:bash}
:string
The tool name
snpEff -version 2>&1 | cut -f 2 -d ' '{:bash}
:string
The command used to generate the version of the tool
Tools
snpeff
MIT
SnpEff is a variant annotation and effect prediction tool.
It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).
