Genetic variant annotation and functional effect prediction toolbox
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
vcf to annotate
db
which db to annotate with
cache
path to snpEff cache (optional)
annotated vcf
*.ann.vcf
report
snpEff report csv file
*.csv
summary_html
snpEff summary statistics in html file
*.html
genes_txt
txt (tab separated) file having counts of the number of variants affecting each transcript and gene
*.genes.txt
versions
File containing software versions
versions.yml
SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).
