Annotate a VCF file with another VCF file
meta:map
Groovy Map containing sample information regarding vcf file provided e.g. [ id:‘test’, single_end
vcf:file
VCF file
*.{vcf, vcf.gz}
vcf_tbi:file
Tabix file for compressed vcf provided
*.{tbi}
meta2:map
Groovy map containing sample information regarding database provided
database:file
Database for use to annotate
*.{vcf/vcf.gz}
dbs_tbi:file
Tabix file for compressed database provided
vcf
Groovy Map containing sample information e.g. [ id:‘test’, single_end
*.vcf:file
Variant Calling File annotated
*.{vcf}
versions
versions.yml:file
File containing software versions
versions.yml
SnpSift is a toolbox that allows you to filter and manipulate annotated files
