modules/snpsift_dbnsfp

The dbNSFP is an integrated database of functional predictions from multiple algorithms

variant callingdbnsfpsnpsiftcancer genomicspredictions

https://github.com/nf-core/modules/[...]/modules/nf-core/snpsift/dbnsfp

Description

The dbNSFP is an integrated database of functional predictions from multiple algorithms

Input

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information regarding vcf file provided
e.g. [ id:‘test’, single_end

]

`vcf` (file)

VCF file

*.{vcf, vcf.gz}

`vcf_tbi` (file)

Tabix file for compressed vcf provided

*.{tbi}

`meta2` (map)

Groovy map containing sample information regarding database provided

`database` (file)

Database for use to annotate

*.{vcf/vcf.gz}

`dbs_tbi` (file)

Tabix file for compressed database provided

*.{tbi}

Output

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`vcf` (file)

Variant Calling File annotated

*.{vcf}

`versions` (file)

File containing software versions

versions.yml

Tools

snpsift
MIT

SnpSift is a toolbox that allows you to filter and manipulate annotated files

pcingola.github.io/SnpEff/ss_introduction pcingola.github.io/SnpEff/ss_dbnsfp https://github.com/pcingola/SnpEff 10.3389/fgene.2012.00035

modules/snpsift_dbnsfp

Description

Input

`meta` (map)

`vcf` (file)

`vcf_tbi` (file)

`meta2` (map)

`database` (file)

`dbs_tbi` (file)

Output

`meta` (map)

`vcf` (file)

`versions` (file)

maintainer

get in touch

Tools

snpsift
MIT

modules/snpsift_dbnsfp

Description

Input

meta (map)

vcf (file)

vcf_tbi (file)

meta2 (map)

database (file)

dbs_tbi (file)

Output

meta (map)

vcf (file)

versions (file)

maintainer

get in touch

Tools

snpsift MIT

`meta` (map)

`vcf` (file)

`vcf_tbi` (file)

`meta2` (map)

`database` (file)

`dbs_tbi` (file)

`meta` (map)

`vcf` (file)

`versions` (file)

snpsift
MIT