Description

The dbNSFP is an integrated database of functional predictions from multiple algorithms

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information regarding vcf file provided
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF file

*.{vcf, vcf.gz}

vcf_tbi (file)

Tabix file for compressed vcf provided

*.{tbi}

meta2 (map)

Groovy map containing sample information regarding database provided

database (file)

Database for use to annotate

*.{vcf/vcf.gz}

dbs_tbi (file)

Tabix file for compressed database provided

*.{tbi}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

Variant Calling File annotated

*.{vcf}

versions (file)

File containing software versions

versions.yml
author
Github user LlaneroHiboreo
get in touch
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Tools

snpsift
MIT

SnpSift is a toolbox that allows you to filter and manipulate annotated files

pcingola.github.io/SnpEff/ss_introduction pcingola.github.io/SnpEff/ss_dbnsfp https://github.com/pcingola/SnpEff 10.3389/fgene.2012.00035