Description

Splits/Joins VCF(s) file into chromosomes

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file (split) or list of files (join))

VCF file(s)

*.{vcf,vcf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

out_vcfs (file)

Split/Joined VCF file(s)

*.vcf
maintainers
Github user SusiJo
Github user jonasscheid
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

snpsift
MIT

SnpSift is a toolbox that allows you to filter and manipulate annotated files

pcingola.github.io/SnpEff/ss_introduction https://github.com/pcingola/SnpEff 10.3389/fgene.2012.00035