Description

Rapidly extracts SNPs from a multi-FASTA alignment.

Input

Name (Type)
Description
Pattern

alignment (file)

fasta alignment file

*.{fasta,fas,fa,aln}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

fasta (file)

Variant fasta file

*.{fas}

constant_sites (file)

Text file containing counts of constant sites

*.{sites.txt}

Tools

snpsites
GPL-3.0-or-later

Rapidly extracts SNPs from a multi-FASTA alignment.