Description

Rapidly extracts SNPs from a multi-FASTA alignment.

Input

name:type
description
pattern

alignment:file

fasta alignment file

*.{fasta,fas,fa,aln}

Output

name:type
description
pattern

fasta

*.fas:file

Variant fasta file

*.{fas}

constant_sites

*.sites.txt:file

Text file containing counts of constant sites

*.{sites.txt}

versions

versions.yml:file

File containing software versions

versions.yml

constant_sites_string

CONSTANT_SITES:integer

Value with the number of constant sites

*.{sites.txt}

Tools

snpsites
GPL-3.0-or-later

Rapidly extracts SNPs from a multi-FASTA alignment.