Rapidly extracts SNPs from a multi-FASTA alignment.
alignment{:bash}
:file
fasta alignment file
*.{fasta,fas,fa,aln}
fasta{:bash}
*.fas{:bash}
Variant fasta file
*.{fas}
constant_sites{:bash}
*.sites.txt{:bash}
Text file containing counts of constant sites
*.{sites.txt}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
constant_sites_string{:bash}
CONSTANT_SITES{:bash}
:integer
Value with the number of constant sites
