Rapidly extracts SNPs from a multi-FASTA alignment.
alignment
:file
fasta alignment file
*.{fasta,fas,fa,aln}
fasta
*.fas
Variant fasta file
*.{fas}
constant_sites
*.sites.txt
Text file containing counts of constant sites
*.{sites.txt}
constant_sites_string
CONSTANT_SITES
:integer
Value with the number of constant sites
versions_snpsites
${task.process}
:string
The name of the process
snpsites
The name of the tool
snp-sites -V 2>&1 | sed 's/snp-sites //'
:eval
The expression to obtain the version of the tool
versions
