Compare many FracMinHash signatures generated by sourmash sketch.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
signatures
:file
Files containing signatures (hash sketches) of samples
*.{sig}
file_list
An optional file specifying a list of file paths that should be appended to the input signatures.
save_numpy_matrix
:boolean
If true, output will contain a (dis)similarity matrix numpy binary format. At least one of save_numpy_matrix or save_csv is required.
save_csv
If true, output will contain a (dis)similarity matrix in CSV format At least one of save_numpy_matrix or save_csv is required.
matrix
*comp.npy
An optional (dis)similarity matrix numpy binary format
*.comp
labels
*comp.npy.labels.txt
A text file that specifies the labels in the output numpy_matrix
*.comp.labels.txt
csv
*comp.csv
An optional (dis)similarity matrix in CSV format
*.comp.csv
versions_sourmash
${task.process}
:string
The name of the process
sourmash
The name of the tool
sourmash --version 2>&1 | sed 's/^sourmash //'
:eval
The expression to obtain the version of the tool
versions
Compute and compare FracMinHash signatures for DNA and protein data sets.
