modules/sourmash_gather
Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome.
Description
Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome.
Input
If true, output will contain a file that is a sourmash signature containing the unassigned hashes from the query
If true, output will contain a file that is a sourmash signature composed of the FracMinHash sketches that were matched in the database and that matched the query
If true, output will contain a file with all prefetch-matched signatures from the database
Output
Table with signatures classified as belonging to any of the genomes
in the sourmash database(s).
*{csv.gz} A signature containing FracMinHash sketches of genomes
in the sourmash database.
*{sig.zip} A FracMinHash sketch containing hashes (k-mers) that did not match to any of the genomes
in the sourmash database(s).
*{sig.zip} 
