Description

Create a database of sourmash signatures (a group of FracMinHash sketches) to be used as references.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

signatures (file)

Files containing signature (hash sketches) of reference genomes

*.{sig}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

signature_index (file)

Database of signatures

*.{sbt.zip}
included in
magmap
maintainer
Github user emnilsson
get in touch
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Tools

sourmash
BSD-3-clause

Compute and compare FracMinHash signatures for DNA data sets.

sourmash.readthedocs.io https://github.com/sourmash-bio/sourmash 10.21105/joss.00027