modules/sourmash_index

Create a database of sourmash signatures (a group of FracMinHash sketches) to be used as references.

signaturessourmashgenomicsmetagenomicsmappingkmer

https://github.com/nf-core/modules/[...]/modules/nf-core/sourmash/index

Description

Create a database of sourmash signatures (a group of FracMinHash sketches) to be used as references.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`signatures:file`

Files containing signature (hash sketches) of reference genomes

*.{sig}

`ksize:integer`

ksize value

Output

name:type

description

pattern

`signature_index`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.sbt.zip:file`

Database of signatures

*.{sbt.zip}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

sourmash
BSD-3-clause

Compute and compare FracMinHash signatures for DNA data sets.

sourmash.readthedocs.io https://github.com/sourmash-bio/sourmash 10.21105/joss.00027

modules/sourmash_index

Description

Input

`meta:map`

`signatures:file`

`ksize:integer`

Output

`signature_index`

`meta:map`

`*.sbt.zip:file`

`versions`

`versions.yml:file`

Tools

sourmash
BSD-3-clause

included in

maintainer

get in touch

modules/sourmash_index

Description

Input

meta:map

signatures:file

ksize:integer

Output

signature_index

meta:map

*.sbt.zip:file

versions

versions.yml:file

Tools

sourmash BSD-3-clause

included in

maintainer

get in touch

`meta:map`

`signatures:file`

`ksize:integer`

`signature_index`

`meta:map`

`*.sbt.zip:file`

`versions`

`versions.yml:file`

sourmash
BSD-3-clause