Description

Create a signature (a group of FracMinHash sketches) of a sequence using sourmash

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

sequence (file)

FASTA or FASTQ file containing (genomic, transcriptomic, or proteomic) sequence data

*.{fna,fa,fasta,fastq,fq,faa}.gz

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

signatures (file)

FracMinHash signature of the given sequence

*.{sig}
included in
magmap pathogensurveillance
maintainer
Github user Midnighter
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

sourmash
BSD-3-clause

Compute and compare FracMinHash signatures for DNA and protein data sets.

sourmash.readthedocs.io https://github.com/sourmash-bio/sourmash 10.21105/joss.00027