Description

Create a signature (a group of FracMinHash sketches) of a sequence using sourmash

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

sequence:file

FASTA or FASTQ file containing (genomic, transcriptomic, or proteomic) sequence data

*.{fna,fa,fasta,fastq,fq,faa}.gz

Output

name:type
description
pattern

signatures

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.sig:file

FracMinHash signature of the given sequence

*.{sig}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

sourmash
BSD-3-clause

Compute and compare FracMinHash signatures for DNA and protein data sets.