Description

Annotate list of metagenome members (based on sourmash signature matches) with taxonomic information.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gather_results (file)

Mandatory table with signatures classified as belonging to any of the genomes
in the sourmash database(s), result of sourmash gather command.

taxonomy (file)

One or more databases with lineages (in CSV format, Mandatory)

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

result (file)

Table with signatures classified as belonging to any of the genomes
in the sourmash database(s) with an additional ‘lineage’ column
containing the taxonomic information for each database match.

*{csv.gz}

versions (file)

File containing software versions

versions.yml
authors
Github user vmikk Github user taylorreiter
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

sourmash
BSD-3-clause

Compute and compare FracMinHash signatures for DNA data sets.

sourmash.readthedocs.io https://github.com/sourmash-bio/sourmash 10.21105/joss.00027