Description

Computational method for finding spa types.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

FASTA assembly file

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}

repeats:file

spa repeat sequences in FASTA format (Optional)

*.{fasta}

repeat_order:file

spa types and order of repeats (Optional)

*.{txt}

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

Tab-delimited results

*.{tsv}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

spatyper
LGPL v3

Computational method for finding spa types.