Computational method for finding spa types.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
repeats
spa repeat sequences in FASTA format (Optional)
*.{fasta}
repeat_order
spa types and order of repeats (Optional)
*.{txt}
versions
File containing software versions
versions.yml
tsv
Tab-delimited results
*.{tsv}
