Computational method for finding spa types.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
repeats
spa repeat sequences in FASTA format (Optional)
*.{fasta}
repeat_order
spa types and order of repeats (Optional)
*.{txt}
tsv
*.tsv
Tab-delimited results
*.{tsv}
versions_spatyper
${task.process}
:string
The name of the process
spatyper
The name of the tool
spaTyper --version 2>&1 | sed 's/^.*spaTyper //'
:eval
The expression to obtain the version of the tool
versions
