Computational method for finding spa types.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta:file
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
repeats:file
spa repeat sequences in FASTA format (Optional)
*.{fasta}
repeat_order:file
spa types and order of repeats (Optional)
*.{txt}
tsv
*.tsv:file
Tab-delimited results
*.{tsv}
versions
versions.yml:file
File containing software versions
versions.yml
