Computational method for finding spa types.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
repeats{:bash}
spa repeat sequences in FASTA format (Optional)
*.{fasta}
repeat_order{:bash}
spa types and order of repeats (Optional)
*.{txt}
tsv{:bash}
*.tsv{:bash}
Tab-delimited results
*.{tsv}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
