Description

Fast, efficient, lossless decompression of FASTQ files.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

spring:file

Spring file to decompress.

*.{spring}

write_one_fastq_gz:boolean

Controls whether spring should write one fastq.gz file with reads from both directions or two fastq.gz files with reads from distinct directions

true or false

Output

name:type
description
pattern

fastq

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fastq.gz:file

Decompressed FASTQ file(s).

*.{fastq.gz}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

spring
Free for non-commercial use

SPRING is a compression tool for Fastq files (containing up to 4.29 Billion reads)