Description

Fast, efficient, lossless decompression of FASTQ files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

spring (file)

Spring file to decompress.

*.{spring}

write_one_fastq_gz (boolean)

Controls whether spring should write one fastq.gz file with reads from both directions or two fastq.gz files with reads from distinct directions

true or false

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fastq (file)

Decompressed FASTQ file(s).

*.{fastq.gz}

Tools

spring
Free for non-commercial use

SPRING is a compression tool for Fastq files (containing up to 4.29 Billion reads)