Extract sequencing reads in FASTQ format from a given NCBI Sequence Read Archive (SRA).
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
sra:directory
Directory containing ETL data for the given SRA.
*/*.sra
ncbi_settings:file
An NCBI user settings file.
*.mkfg
certificate:file
Path to a JWT cart file used to access protected dbGAP data on SRA using the sra-toolkit
*.cart
reads
*.fastq.gz:file
Extracted FASTQ file or files if the sequencing reads are paired-end.
*.fastq.gz
versions
versions.yml:file
File containing software versions
versions.yml
SRA Toolkit and SDK from NCBI
