Predicts Staphylococcus aureus SCCmec type based on primers.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
tsv
*.tsv
Tab-delimited results
*.{tsv}
versions_staphopiasccmec
${task.process}
:string
The name of the process
staphopiasccmec
The name of the tool
staphopia-sccmec --version 2>&1 | sed "s/^.*staphopia-sccmec //"
:eval
The expression to obtain the version of the tool
versions
