Create index for STAR
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Fasta file of the reference genome
meta2{:bash}
Groovy Map containing reference information e.g. [ id:‘test’ ]
gtf{:bash}
GTF file of the reference genome
index{:bash}
star{:bash}
:directory
Folder containing the star index files
star
versions_star{:bash}
${task.process}{:bash}
:string
The name of the process
The name of the tool
STAR --version | sed -e "s/STAR_//g"{:bash}
:eval
The expression to obtain the version of the tool
versions_samtools{:bash}
samtools{:bash}
samtools --version | sed -n '1s/samtools //p'{:bash}
versions_gawk{:bash}
gawk{:bash}
gawk --version | sed -n '1{s/GNU Awk //;s/,.*//;p}'{:bash}
versions{:bash}
STAR is a software package for mapping DNA sequences against a large reference genome, such as the human genome.
