Description

Create index for STAR

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Fasta file of the reference genome

meta2 (map)

Groovy Map containing reference information
e.g. [ id:‘test’ ]

gtf (file)

GTF file of the reference genome

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

index (directory)

Folder containing the star index files

star

versions (file)

File containing software versions

versions.yml
included in
circrna marsseq oncoanalyser riboseq rnadnavar rnafusion rnaseq rnasplice rnavar scrnaseq viralintegration
maintainers
Github user kevinmenden
Github user drpatelh
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

star
MIT

STAR is a software package for mapping DNA sequences against a large reference genome, such as the human genome.

github.com/alexdobin/STAR 10.1093/bioinformatics/bts635