modules/star_starsolo
Create a counts matrix for single-cell data using STARSolo, handling cell barcodes and UMI information.
aligncountgenomereference
Description
Create a counts matrix for single-cell data using STARSolo, handling cell barcodes and UMI information.
Input
Name (Type)
Description
Pattern
Groovy Map containing sample information.
Here, you should add all the specific barcode/umi
information for each sample.
e.g. [ id:'test_starsolo', umi_len:'12', cb_start:1 ]
Type of single-cell library.
It can be CB_UMI_Simple for most common ones such as 10xv2 and 10xv3,
CB_UMI_Complex for method such as inDrop and SmartSeq for SMART-Seq.
maintainers
