Serotype STEC samples from paired-end reads or assemblies
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
seqs:file
Illumina paired-end reads or an assembly
*.{fastq.gz,fasta.gz,fna.gz}
tsv
*.tsv:file
A tab-delimited report of results
*.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Cluster informed Shigatoxin producing E. coli (STEC) serotyping tool from Illumina reads and assemblies
