Serotype STEC samples from paired-end reads or assemblies
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs
Illumina paired-end reads or an assembly
*.{fastq.gz,fasta.gz,fna.gz}
versions
File containing software versions
versions.yml
tsv
A tab-delimited report of results
*.tsv
Cluster informed Shigatoxin producing E. coli (STEC) serotyping tool from Illumina reads and assemblies
