Transcript assembly and quantification for RNA-Se
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
Stringtie transcript gtf output(s).
annotation_gtf:file
Annotation gtf file (optional).
transcript_gtf
*.transcripts.gtf:file
transcript gtf
*.{transcripts.gtf}
abundance
*.abundance.txt:file
*.{abundance.txt}
coverage_gtf
*.coverage.gtf:file
coverage gtf
*.{coverage.gtf}
ballgown
*.ballgown:file
for running ballgown
*.{ballgown}
versions
versions.yml:file
File containing software versions
versions.yml
Transcript assembly and quantification for RNA-Seq
