Transcript assembly and quantification for RNA-Se
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
Stringtie transcript gtf output(s).
annotation_gtf
Annotation gtf file (optional).
transcript_gtf
transcript gtf
*.{transcripts.gtf}
coverage_gtf
coverage gtf
*.{coverage.gtf}
abudance
*.{abudance.txt}
ballgown
for running ballgown
*.{ballgown}
versions
File containing software versions
versions.yml
Transcript assembly and quantification for RNA-Seq
