Groovy Map containing information related to the experiment as a whole
e.g. [ id:'SRP123456' ]
matrix_files
:directory
One or more paths to CSV or TSV matrix files. All files must have the
same rows and columns.
*.{csv,tsv}
meta2
:map
Groovy Map containing reference information related to the species
reference from which matrix rows are derived e.g. [ id:'yeast' ]
rowdata
:file
Metadata on matrix features. One column must contain all matrix row
IDs.
*.{csv,tsv}
meta3
:map
Groovy Map containing information related to the experiment as a whole,
as represented by the matrix columns and the sample sheet e.g.
[id:'SRP123456' ]
coldata
:file
Metadata on matrix columns. One column must contain all matrix column
IDs.
*.{csv,tsv}
Output
name:type
description
pattern
rds
meta
:map
Groovy Map containing information related to the experiment as a whole
e.g. [ id:'SRP123456' ]
*.rds
:file
Serialised SummarizedExperiment object
*.SummarizedExperiment.rds
log
meta
:map
Groovy Map containing information related to the experiment as a whole
e.g. [ id:'SRP123456' ]
*.R_sessionInfo.log
:file
dump of R SessionInfo
*.log
versions
versions.yml
:file
YAML file containing versions of tools used in the module
Topics
name:type
description
pattern
versions
versions.yml
:string
The name of the process
Tools
summarizedexperiment
Artistic-2.0
The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
