Groovy Map containing information related to the experiment as a whole
e.g. [ id:'SRP123456' ]
matrix_files{:bash}
:directory
One or more paths to CSV or TSV matrix files. All files must have the
same rows and columns.
*.{csv,tsv}
meta2{:bash}
:map
Groovy Map containing reference information related to the species
reference from which matrix rows are derived e.g. [ id:'yeast' ]
rowdata{:bash}
:file
Metadata on matrix features. One column must contain all matrix row
IDs.
*.{csv,tsv}
meta3{:bash}
:map
Groovy Map containing information related to the experiment as a whole,
as represented by the matrix columns and the sample sheet e.g.
[id:'SRP123456' ]
coldata{:bash}
:file
Metadata on matrix columns. One column must contain all matrix column
IDs.
*.{csv,tsv}
Output
name:type
description
pattern
rds{:bash}
meta{:bash}
:map
Groovy Map containing information related to the experiment as a whole
e.g. [ id:'SRP123456' ]
*.rds{:bash}
:file
Serialised SummarizedExperiment object
*.SummarizedExperiment.rds
log{:bash}
meta{:bash}
:map
Groovy Map containing information related to the experiment as a whole
e.g. [ id:'SRP123456' ]
*.R_sessionInfo.log{:bash}
:file
dump of R SessionInfo
*.log
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
summarizedexperiment
Artistic-2.0
The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
