Filter a vcf file based on size and/or regions to ignore
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf_file:file
VCF file to filter
bed:file
BED file with regions to ignore (NA to disable)
minsv:integer
Min SV size (-1 to disable)
maxsv:integer
Max SV size (-1 to disable)
minallelefreq:float
Min allele frequency (0-1)
minnumreads:integer
Min number of reads support [RE flag (-1 to disable)]
vcf
*.vcf:file
Filtered VCF file
*.{vcf}
versions
versions.yml:file
File containing software versions
versions.yml
Toolset for SV simulation, comparison and filtering
