Filter a vcf file based on size and/or regions to ignore
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
VCF file to filter
*.{vcf}
bed
BED file with regions to ignore (NA to disable)
minsv
Min SV size (-1 to disable)
maxsv
Max SV size (-1 to disable)
minallelefreq
Min allele frequency (0-1)
minnumreads
Min number of reads support [RE flag (-1 to disable)]
versions
File containing software versions
versions.yml
Filtered VCF file
Toolset for SV simulation, comparison and filtering
