Description

Report multipe stats over a VCF file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

vcf:file

VCF file to filter

*.{vcf}

minsv:integer

Min SV size (-1 to disable)

maxsv:integer

Max SV size (-1 to disable)

minnumreads:integer

Min number of reads support [RE flag (-1 to disable)]

Output

name:type
description
pattern

stats

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.stats:file

File containing statistics given input VCF file

*.{stats}

versions

versions.yml:file

File containing software versions

versions.yml