Description

Report multipe stats over a VCF file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF file to filter

*.{vcf}

minsv (integer)

Min SV size (-1 to disable)

maxsv (integer)

Max SV size (-1 to disable)

minnumreads (integer)

Min number of reads support [RE flag (-1 to disable)]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

stats (file)

File containing statistics given input VCF file

*.{stats}