Report multiple stats over a VCF file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
VCF file to filter
*.{vcf}
minsv
:integer
Min SV size (-1 to disable)
maxsv
Max SV size (-1 to disable)
minnumreads
Min number of reads support [RE flag (-1 to disable)]
stats
*.stats
File containing statistics given input VCF file
*.{stats}
versions_survivor
${task.process}
:string
The process the versions were collected from
survivor
The name of the tool
SURVIVOR 2>&1 | grep 'Version' | sed 's/Version: //'
:eval
The expression to obtain the version of the tool
versions
Toolset for SV simulation, comparison and filtering
