modules/svanalyzer_svbenchmark
SVbenchmark compares a set of “test” structural variants in VCF format to a known truth set (also in VCF format) and outputs estimates of sensitivity and specificity.
structural variantsvbenchmarking
Description
SVbenchmark compares a set of “test” structural variants in VCF format to a known truth set (also in VCF format) and outputs estimates of sensitivity and specificity.
Input
Name (Type)
Description
Pattern
A VCF-formatted file index of structural variants to test only for zipped files
*.{vcf.gz.tbi}
A VCF-formatted file of variants to compare against only for zipped files
*.{vcf.gz.tbi}
The reference FASTA file for the supplied VCF file or files (required)
*.{fa,fasta,fa.gz,fasta.gz}