Description

The merge module merges structural variants within one or more vcf files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

priority (list)

prioritise the input vcf files according to this list, e.g ['tiddit','cnvnator']

vcfs (list)

Two or more VCF files. Order of files should correspond to the order of tags used for priority.

*.{vcf,vcf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

versions (file)

File containing software versions

versions.yml

vcf (file)

merged VCF file

*_sv_merge.vcf.gz

Tools