Query a structural variant database, using a vcf file as query
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
in_occs
A list of allele count tags
in_frqs
A list of allele frequency tags
vcf
query vcf file
*.{vcf,vcf.gz}
vcf_db
database vcf file
Groovy Map containing sample information e.g. [ id:‘test’ ]
versions
File containing software versions
versions.yml
out_occs
out_frqs
Annotated output VCF file
*_query.vcf
structural variant database software