Description

Query a structural variant database, using a vcf file as query

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

in_occs (list)

A list of allele count tags

in_frqs (list)

A list of allele frequency tags

vcf (file)

query vcf file

*.{vcf,vcf.gz}

vcf_db (file)

database vcf file

*.{vcf,vcf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

versions (file)

File containing software versions

versions.yml

out_occs (list)

A list of allele count tags

out_frqs (list)

A list of allele frequency tags

vcf (file)

Annotated output VCF file

*_query.vcf
included in
raredisease
author
Github user ramprasadn
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Tools

svdb
MIT

structural variant database software

github.com/J35P312/SVDB github.com/J35P312/SVDB/blob/master/README.md