Query a structural variant database, using a vcf file as query
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf:file
query vcf file
*.{vcf,vcf.gz}
in_occs:list
A list of allele count tags
in_frqs:list
A list of allele frequency tags
out_occs:list
out_frqs:list
vcf_dbs:file
path to a database vcf, or a comma separated list of vcfs
bedpe_dbs:file
path to a SV database of the following format chrA-posA-chrB-posB-type-count-frequency, or a comma separated list of files
*.{bedpe}
vcf
Groovy Map containing sample information e.g. [ id:‘test’ ]
*_query.vcf:file
Annotated output VCF file
*_query.vcf
versions
versions.yml:file
File containing software versions
versions.yml
structural variant database software
