Performs tests on BAF files
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed:file
A BED file created with svtk vcf2bed
svtk vcf2bed
*.bed
baf:file
A BAF file created with gatk PrintSVEvidence
gatk PrintSVEvidence
*.baf.txt.gz
baf_index:file
The index of the BAF file
*.baf.txt.gz.tbi
batch:file
A text file containing information about the sample(s)
*.txt
metrics
*.metrics:file
The results file from the BAF test
*.metrics
versions
versions.yml:file
File containing software versions
versions.yml
Utilities for consolidating, filtering, resolving, and annotating structural variants.
