Performs tests on BAF files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
A BED file created with svtk vcf2bed
svtk vcf2bed
*.bed
baf
A BAF file created with gatk PrintSVEvidence
gatk PrintSVEvidence
*.baf.txt.gz
baf_index
The index of the BAF file
*.baf.txt.gz.tbi
batch
A text file containing information about the sample(s)
*.txt
metrics
*.metrics
The results file from the BAF test
versions_svtk
${task.process}
:string
The process the versions were collected from
svtk
The tool name
0.0.20190615
The expression to obtain the version of the tool
versions
Utilities for consolidating, filtering, resolving, and annotating structural variants.
