Performs tests on BAF files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
A BED file created with svtk vcf2bed
svtk vcf2bed
*.bed
baf{:bash}
A BAF file created with gatk PrintSVEvidence
gatk PrintSVEvidence
*.baf.txt.gz
baf_index{:bash}
The index of the BAF file
*.baf.txt.gz.tbi
batch{:bash}
A text file containing information about the sample(s)
*.txt
metrics{:bash}
*.metrics{:bash}
The results file from the BAF test
*.metrics
versions_svtk{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
svtk{:bash}
The tool name
0.0.20190615{:bash}
The expression to obtain the version of the tool
versions{:bash}
Utilities for consolidating, filtering, resolving, and annotating structural variants.
