Count the instances of each SVTYPE observed in each sample in a VCF.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
The VCF file containing structural variants
*.vcf.gz
counts
*.tsv
A tab-delimited file containing the counts of the SV types
versions_svtk
${task.process}
:string
The process the versions were collected from
svtk
The tool name
0.0.20190615
The expression to obtain the version of the tool
versions
Utilities for consolidating, filtering, resolving, and annotating structural variants.
