Count the instances of each SVTYPE observed in each sample in a VCF.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
The VCF file containing structural variants
*.vcf.gz
counts{:bash}
*.tsv{:bash}
A tab-delimited file containing the counts of the SV types
*.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Utilities for consolidating, filtering, resolving, and annotating structural variants.
