Count the instances of each SVTYPE observed in each sample in a VCF.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
The VCF file containing structural variants
*.vcf.gz
counts{:bash}
*.tsv{:bash}
A tab-delimited file containing the counts of the SV types
*.tsv
versions_svtk{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
svtk{:bash}
The tool name
0.0.20190615{:bash}
The expression to obtain the version of the tool
versions{:bash}
Utilities for consolidating, filtering, resolving, and annotating structural variants.
