Convert an RdTest-formatted bed to the standard VCF format.
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
An RdTest-formatted bed
A text file containing the names of all samples that need to be added to the VCF
The reference file of a FASTA file containing the contigs
File containing software versions
The converted VCF
The index of the converted VCF
Utilities for consolidating, filtering, resolving, and annotating structural variants.