Convert an RdTest-formatted bed to the standard VCF format.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed:file
An RdTest-formatted bed
*.bed
samples:file
A text file containing the names of all samples that need to be added to the VCF
*.txt
fasta_fai:file
The reference file of a FASTA file containing the contigs
*.fai
vcf
*.vcf.gz:file
The converted VCF
*.vcf.gz
tbi
*.vcf.gz.tbi:file
The index of the converted VCF
*.vcf.gz.tbi
versions
versions.yml:file
File containing software versions
versions.yml
Utilities for consolidating, filtering, resolving, and annotating structural variants.
