Convert an RdTest-formatted bed to the standard VCF format.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed
An RdTest-formatted bed
*.bed
samples
A text file containing the names of all samples that need to be added to the VCF
*.txt
fasta_fai
The reference file of a FASTA file containing the contigs
*.fai
versions
File containing software versions
versions.yml
vcf
The converted VCF
*.vcf.gz
tbi
The index of the converted VCF
*.vcf.gz.tbi
Utilities for consolidating, filtering, resolving, and annotating structural variants.
