Convert an RdTest-formatted bed to the standard VCF format.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
An RdTest-formatted bed
*.bed
samples{:bash}
A text file containing the names of all samples that need to be added to the VCF
*.txt
fasta_fai{:bash}
The reference file of a FASTA file containing the contigs
*.fai
vcf{:bash}
*.vcf.gz{:bash}
The converted VCF
*.vcf.gz
tbi{:bash}
*.vcf.gz.tbi{:bash}
The index of the converted VCF
*.vcf.gz.tbi
versions_svtk{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
svtk{:bash}
The tool name
0.0.20190615{:bash}
The expression to obtain the version of the tool
versions{:bash}
Utilities for consolidating, filtering, resolving, and annotating structural variants.
