Convert an RdTest-formatted bed to the standard VCF format.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
An RdTest-formatted bed
*.bed
samples
A text file containing the names of all samples that need to be added to the VCF
*.txt
fasta_fai
The reference file of a FASTA file containing the contigs
*.fai
vcf
*.vcf.gz
The converted VCF
tbi
*.vcf.gz.tbi
The index of the converted VCF
versions_svtk
${task.process}
:string
The process the versions were collected from
svtk
The tool name
0.0.20190615
The expression to obtain the version of the tool
versions
Utilities for consolidating, filtering, resolving, and annotating structural variants.
