Convert SV calls to a standardized format.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf:file
A gzipped VCF file to be standardized
*.vcf.gz
fasta_fai:file
Optional fasta index file that specifies the contigs to be used in the VCF header (defaults to all contigs of GRCh37)
*.fai
standardized_vcf
*.std.vcf.gz:file
A gzipped version of the standardized VCF file
*.std.vcf.gz
versions
versions.yml:file
File containing software versions
versions.yml
Utilities for consolidating, filtering, resolving, and annotating structural variants.
