Converts VCFs containing structural variants to BED format
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
A VCF file created with a structural variant caller
*.vcf.gz
tbi{:bash}
The index for the VCF file
*.vcf.gz.tbi
bed{:bash}
*.bed{:bash}
The created BED file
*.bed
versions_svtk{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
svtk{:bash}
The tool name
0.0.20190615{:bash}
The expression to obtain the version of the tool
versions{:bash}
Utilities for consolidating, filtering, resolving, and annotating structural variants.
