Description

A tool to standardize VCF files from structural variant callers

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

vcf:file

The input VCF file containing structural variants

*.{vcf,vcf.gz}

tbi:file

The index of the input VCF file containing structural variants

*.tbi

config:file

The config stating how the standardization should happen

*.{yml,yaml}

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.vcf.gz:file

The standardized VCF file

*.vcf.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

svync
MIT

A tool to standardize VCF files from structural variant callers