A tool to standardize VCF files from structural variant callers
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
vcf{:bash}
:file
The input VCF file containing structural variants
*.{vcf,vcf.gz}
tbi{:bash}
The index of the input VCF file containing structural variants
*.tbi
config{:bash}
The config stating how the standardization should happen
*.{yml,yaml}
*.vcf.gz{:bash}
The standardized VCF file
*.vcf.gz
*.tbi{:bash}
The index of the standardized VCF file
versions_svync{:bash}
${task.process}{:bash}
:string
The name of the process
svync{:bash}
The name of the tool
svync --version | sed 's/svync version //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
