A tool to standardize VCF files from structural variant callers
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
vcf:file
The input VCF file containing structural variants
*.{vcf,vcf.gz}
tbi:file
The index of the input VCF file containing structural variants
*.tbi
config:file
The config stating how the standardization should happen
*.{yml,yaml}
vcf
*.vcf.gz:file
The standardized VCF file
*.vcf.gz
versions
versions.yml:file
File containing software versions
versions.yml
