Description

Compresses/decompresses files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input:file

file to compress or to decompress

Output

name:type
description
pattern

output

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${output}:file

Output compressed/decompressed file

*.

gzi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${output}.gzi:file

Optional gzip index file for compressed inputs

*.gzi

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bgzip
MIT

Bgzip compresses or decompresses files in a similar manner to, and compatible with, gzip.