modules/tabix_bgziptabix

bgzip a sorted tab-delimited genome file and then create tabix index

bgzipcompressindextabixvcf

https://github.com/nf-core/modules/[...]/modules/nf-core/tabix/bgziptabix

Description

bgzip a sorted tab-delimited genome file and then create tabix index

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`input:file`

Sorted tab-delimited genome file

Output

name:type

description

pattern

`gz_tbi`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.gz:file`

bgzipped tab-delimited genome file

*.gz

`*.tbi:file`

tabix index file

*.tbi

`gz_csi`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.gz:file`

bgzipped tab-delimited genome file

*.gz

`*.csi:file`

csi index file

*.csi

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

tabix
MIT

Generic indexer for TAB-delimited genome position files.

htslib.org/doc/tabix htslib.org/doc/tabix.1 10.1093/bioinformatics/btq671

modules/tabix_bgziptabix

Description

Input

`meta:map`

`input:file`

Output

`gz_tbi`

`meta:map`

`*.gz:file`

`*.tbi:file`

`gz_csi`

`meta:map`

`*.gz:file`

`*.csi:file`

`versions`

`versions.yml:file`

Tools

tabix
MIT

included in

maintainers

get in touch

modules/tabix_bgziptabix

Description

Input

meta:map

input:file

Output

gz_tbi

meta:map

*.gz:file

*.tbi:file

gz_csi

meta:map

*.gz:file

*.csi:file

versions

versions.yml:file

Tools

tabix MIT

included in

maintainers

get in touch

`meta:map`

`input:file`

`gz_tbi`

`meta:map`

`*.gz:file`

`*.tbi:file`

`gz_csi`

`meta:map`

`*.gz:file`

`*.csi:file`

`versions`

`versions.yml:file`

tabix
MIT