Description

bgzip a sorted tab-delimited genome file and then create tabix index

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tab (file)

TAB-delimited genome position file

*.{bed,gff,sam,vcf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gz (file)

Output compressed file

*.{gz}

tbi (file)

tabix index file

*.{gz.tbi}

csi (file)

tabix alternate index file

*.{gz.csi}

versions (file)

File containing software versions

versions.yml

Tools

tabix
MIT

Generic indexer for TAB-delimited genome position files.