Description

create tabix index from a sorted bgzip tab-delimited genome file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

tab:file

TAB-delimited genome position file compressed with bgzip

*.{bed.gz,gff.gz,sam.gz,vcf.gz}

Output

name:type
description
pattern

tbi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tbi:file

tabix index file

*.{tbi}

csi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.csi:file

coordinate sorted index file

*.{csi}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

tabix
MIT

Generic indexer for TAB-delimited genome position files.