Description

Estimating poly(A)-tail lengths from basecalled fast5 files produced by Nanopore sequencing of RNA and DNA

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

fast5{:bash}

:file

fast5 file

*.fast5

Output

name:type
description
pattern

csv_gz{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.csv.gz{:bash}

:file

Compressed csv file

*.csv.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

tailfindr
AGPL v3

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

github.com/adnaniazi/tailfindr github.com/adnaniazi/tailfindr/blob/master/README.md https://github.com/adnaniazi/tailfindr 10.1261/rna.071332.119
maintainer
Github user lucacozzuto
get in touch
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