Description

Estimating poly(A)-tail lengths from basecalled fast5 files produced by Nanopore sequencing of RNA and DNA

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

fast5 (file)

fast5 file

*.fast5

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

versions (file)

File containing software versions

versions.yml

csv_gz (file)

Compressed csv file

*.csv.gz
maintainer
Github user lucacozzuto
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

tailfindr
AGPL v3

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

github.com/adnaniazi/tailfindr github.com/adnaniazi/tailfindr/blob/master/README.md https://github.com/adnaniazi/tailfindr 10.1261/rna.071332.119