Convert taxon names to TaxIds
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
name
:string
Taxon name to look up (provide either this or names.txt, not both)
names_txt
:file
File with taxon names to look up, each on their own line (provide either this or name, not both)
taxdb
Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz
tsv
*.tsv
TSV file of Taxon names and their taxon ID
versions_taxonkit
${task.process}
The name of the process
taxonkit
The name of the tool
taxonkit version | sed 's/.* v//'
:eval
The expression to obtain the version of the tool
versions
A Cross-platform and Efficient NCBI Taxonomy Toolkit
