Convert taxon names to TaxIds
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
name{:bash}
:string
Taxon name to look up (provide either this or names.txt, not both)
names_txt{:bash}
:file
File with taxon names to look up, each on their own line (provide either this or name, not both)
taxdb{:bash}
Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz
tsv{:bash}
*.tsv{:bash}
TSV file of Taxon names and their taxon ID
*.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A Cross-platform and Efficient NCBI Taxonomy Toolkit
