A tool to detect resistance and lineages of M. tuberculosis genomes
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
reads
FASTQ file
*.{fastq.gz,fq.gz}
versions
File containing software versions
versions.yml
bam
BAM file with alignment details
*.bam
csv
Optional CSV formated result file of resistance and strain type
*.csv
json
JSON formated result file of resistance and strain type
*.json
txt
Optional text file of resistance and strain type
*.txt
vcf
VCF with variant info again refernce genomes
*.vcf
Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from WGS data
